PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676730178
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family YABBY
Protein Properties Length: 230aa    MW: 25736 Da    PI: 6.0295
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676730178genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY244.22.5e-7591812169
      YABBY   2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas....qllaaeshldeslkeelle.elkveeenlksnvekeesastsv 96 
                ++f+ ++q+C+vqC+fC+til+vsvP+tsl++vvtvrCGhCtsllsvnl+kas    +ll++ shlde++kee+++ +++veee++k+ +ek++s++t v
  676730178   9 QLFDLPGQICHVQCGFCTTILLVSVPFTSLSMVVTVRCGHCTSLLSVNLMKASfiplHLLTSLSHLDEAGKEEVAAtTDGVEEEACKVPQEKDNSPTTLV 108
                78999**********************************************9999999***************8761678999***************99 PP

      YABBY  97 sseklsenedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfg 169
                +s+  +e+ed++v+rv++ v++PPekrqr+Psayn+fikeei+r+k++nP+++h+eafs+aaknWahfP++ ++
  676730178 109 TSSD-NEDEDRDVSRVYQvVNKPPEKRQRAPSAYNCFIKEEIRRLKSQNPSMAHKEAFSLAAKNWAHFPPVQNK 181
                9977.999**********899*************************************************9887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046901.9E-5914180IPR006780YABBY protein
SuperFamilySSF470957.99E-9122177IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.109.5E-6128177IPR009071High mobility group box domain
CDDcd000840.0036136172No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MPNMTTLNQL FDLPGQICHV QCGFCTTILL VSVPFTSLSM VVTVRCGHCT SLLSVNLMKA  60
SFIPLHLLTS LSHLDEAGKE EVAATTDGVE EEACKVPQEK DNSPTTLVTS SDNEDEDRDV  120
SRVYQVVNKP PEKRQRAPSA YNCFIKEEIR RLKSQNPSMA HKEAFSLAAK NWAHFPPVQN  180
KRAASDHCFC EDDNSALLSC NVLEDHEESN NGFRERKAQR HSIWGKSPFE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1950470.0AF195047.1 Arabidopsis thaliana INNER NO OUTER (INO) mRNA, complete cds.
GenBankBT0264100.0BT026410.1 Arabidopsis thaliana At1g23420 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013662883.11e-158PREDICTED: axial regulator YABBY 4-like
RefseqXP_009115528.11e-158PREDICTED: axial regulator YABBY 4
RefseqXP_013696181.11e-158PREDICTED: axial regulator YABBY 4-like
SwissprotQ9LDT31e-146YAB4_ARATH; Axial regulator YABBY 4
TrEMBLA0A078I2741e-158A0A078I274_BRANA; BnaA09g31050D protein
TrEMBLA0A078EVT11e-158A0A078EVT1_BRANA; BnaC05g18750D protein
STRINGBra024599.1-P1e-155(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM80442740
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23420.11e-147YABBY family protein